IL_4WQU_370

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_370 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1258

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4WQU|1|DA|G|1405
4WQU|1|DA|U|1406
4WQU|1|DA|C|1407
*
4WQU|1|DA|G|1494
4WQU|1|DA|U|1495
4WQU|1|DA|C|1496

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA