IL_4WQU_377

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_377 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.1875

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4WQU|1|DY|C|11
4WQU|1|DY|U|12
4WQU|1|DY|C|13
*
4WQU|1|DY|G|22
4WQU|1|DY|A|23
4WQU|1|DY|G|24

Current chains

Chain DY

P-site tRNA

Nearby chains

Chain DK

30S ribosomal protein S11