IL_4WQU_379

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGG*CUACC

Length

9 nucleotides

Bulged bases

4WQU|1|AA|A|942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_379 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.3744

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WQU|1|AA|G|926
4WQU|1|AA|G|927
4WQU|1|AA|G|928
4WQU|1|AA|G|929
*
4WQU|1|AA|C|940
4WQU|1|AA|U|941
4WQU|1|AA|A|942
4WQU|1|AA|C|943
4WQU|1|AA|C|944

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L16

Chain AZ

50S ribosomal protein L25