IL_4WQU_394

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_394 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.065

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4WQU|1|CA|G|1666
4WQU|1|CA|G|1667
4WQU|1|CA|A|1668
4WQU|1|CA|A|1669
4WQU|1|CA|C|1670
4WQU|1|CA|U|1671
4WQU|1|CA|C|1672
4WQU|1|CA|U|1673
4WQU|1|CA|G|1674
*
4WQU|1|CA|C|1990
4WQU|1|CA|U|1991
4WQU|1|CA|G|1992
4WQU|1|CA|U|1993
4WQU|1|CA|C|1994

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CO

50S ribosomal protein L14