IL_4WQU_395

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_395 not in the Motif Atlas

Homologous match to IL_9DFE_075

Geometric discrepancy: 0.0831

The information below is about IL_9DFE_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4WQU|1|CA|G|1856
4WQU|1|CA|G|1857
4WQU|1|CA|G|1858
4WQU|1|CA|A|1859
4WQU|1|CA|G|1860
*
4WQU|1|CA|C|1882
4WQU|1|CA|G|1883
4WQU|1|CA|A|1884
4WQU|1|CA|A|1885
4WQU|1|CA|C|1886

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28

Chain CC

50S ribosomal protein L1

Chain DY

Transfer RNA; tRNA