IL_4WQU_398

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAGGUGGGAGC*GCGCCGGUGAAAUACCACCC

Length

39 nucleotides

Bulged bases

4WQU|1|CA|G|2112, 4WQU|1|CA|U|2113, 4WQU|1|CA|C|2164, 4WQU|1|CA|G|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|CA|G|2110
4WQU|1|CA|C|2111
4WQU|1|CA|G|2112
4WQU|1|CA|U|2113
4WQU|1|CA|A|2114
4WQU|1|CA|G|2115
4WQU|1|CA|G|2116
4WQU|1|CA|A|2117
4WQU|1|CA|U|2118
4WQU|1|CA|A|2119
4WQU|1|CA|G|2120
4WQU|1|CA|G|2121
4WQU|1|CA|U|2122
4WQU|1|CA|G|2123
4WQU|1|CA|G|2124
4WQU|1|CA|G|2125
4WQU|1|CA|A|2126
4WQU|1|CA|G|2127
4WQU|1|CA|C|2128
*
4WQU|1|CA|G|2160
4WQU|1|CA|C|2161
4WQU|1|CA|G|2162
4WQU|1|CA|C|2163
4WQU|1|CA|C|2164
4WQU|1|CA|G|2165
4WQU|1|CA|G|2166
4WQU|1|CA|U|2167
4WQU|1|CA|G|2168
4WQU|1|CA|A|2169
4WQU|1|CA|A|2170
4WQU|1|CA|A|2171
4WQU|1|CA|U|2172
4WQU|1|CA|A|2173
4WQU|1|CA|C|2174
4WQU|1|CA|C|2175
4WQU|1|CA|A|2176
4WQU|1|CA|C|2177
4WQU|1|CA|C|2178
4WQU|1|CA|C|2179

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L1

Chain DY

Transfer RNA; tRNA