IL_4WRA_156

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4WRA|1|14|C|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_156 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2961

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4WRA|1|14|G|2110
4WRA|1|14|C|2111
4WRA|1|14|G|2112
4WRA|1|14|U|2113
4WRA|1|14|A|2114
4WRA|1|14|G|2115
4WRA|1|14|G|2116
4WRA|1|14|A|2117
4WRA|1|14|U|2118
4WRA|1|14|A|2119
4WRA|1|14|G|2120
*
4WRA|1|14|C|2178
4WRA|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA