IL_4WRA_372

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_372 not in the Motif Atlas

Homologous match to IL_4WSM_370

Geometric discrepancy: 0.3373

The information below is about IL_4WSM_370

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WRA|1|1K|G|2
4WRA|1|1K|U|3
4WRA|1|1K|G|4
*
4WRA|1|1K|C|78
4WRA|1|1K|A|79
4WRA|1|1K|C|80

Current chains

Chain 1K

tRNA-Tyr

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 2K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16