IL_4WRA_417

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GACAACC*GGCUAAUC

Length

15 nucleotides

Bulged bases

4WRA|1|13|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_417 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.222

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4WRA|1|13|G|148
4WRA|1|13|A|149
4WRA|1|13|C|150
4WRA|1|13|A|151
4WRA|1|13|A|152
4WRA|1|13|C|153
4WRA|1|13|C|154
*
4WRA|1|13|G|167
4WRA|1|13|G|168
4WRA|1|13|C|169
4WRA|1|13|U|170
4WRA|1|13|A|171
4WRA|1|13|A|172
4WRA|1|13|U|173
4WRA|1|13|C|174

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20