IL_4WRO_369

3D structure

PDB id

4WRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGG*CCAG

Length

7 nucleotides

Bulged bases

4WRO|1|1J|A|66||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRO_369 not in the Motif Atlas

Homologous match to IL_7A0S_112

Geometric discrepancy: 0.398

The information below is about IL_7A0S_112

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4WRO|1|1J|C|17||||P_1
4WRO|1|1J|G|18||||P_1
4WRO|1|1J|G|19||||P_1
*
4WRO|1|1J|C|64||||P_1
4WRO|1|1J|C|65||||P_1
4WRO|1|1J|A|66||||P_1
4WRO|1|1J|G|67||||P_1

Current chains

Chain 1J

5S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA