IL_4WRO_418

3D structure

PDB id

4WRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGCC*GGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRO_418 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2309

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4WRO|1|1H|C|2140||||P_1
4WRO|1|1H|G|2141||||P_1
4WRO|1|1H|C|2142||||P_1
4WRO|1|1H|C|2143||||P_1
*
4WRO|1|1H|G|2148||||P_1
4WRO|1|1H|G|2149||||P_1
4WRO|1|1H|U|2150||||P_1
4WRO|1|1H|G|2151||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11