IL_4WSD_009
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GACAACC*GGCUAAUC
- Length
- 15 nucleotides
- Bulged bases
- 4WSD|1|13|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_009 not in the Motif Atlas
- Homologous match to IL_6CZR_121
- Geometric discrepancy: 0.213
- The information below is about IL_6CZR_121
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.5
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
4WSD|1|13|G|148
4WSD|1|13|A|149
4WSD|1|13|C|150
4WSD|1|13|A|151
4WSD|1|13|A|152
4WSD|1|13|C|153
4WSD|1|13|C|154
*
4WSD|1|13|G|167
4WSD|1|13|G|168
4WSD|1|13|C|169
4WSD|1|13|U|170
4WSD|1|13|A|171
4WSD|1|13|A|172
4WSD|1|13|U|173
4WSD|1|13|C|174
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain BI
- 30S ribosomal protein S20
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