IL_4WSD_019
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAAGAAGC*GUGUAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_019 not in the Motif Atlas
- Homologous match to IL_6CZR_129
- Geometric discrepancy: 0.1508
- The information below is about IL_6CZR_129
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58819.1
- Basepair signature
- cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4WSD|1|13|G|409
4WSD|1|13|G|410
4WSD|1|13|A|411
4WSD|1|13|A|412
4WSD|1|13|G|413
4WSD|1|13|A|414
4WSD|1|13|A|415
4WSD|1|13|G|416
4WSD|1|13|C|417
*
4WSD|1|13|G|426
4WSD|1|13|U|427
4WSD|1|13|G|428
4WSD|1|13|U|429
4WSD|1|13|A|430
4WSD|1|13|A|431
4WSD|1|13|A|432
4WSD|1|13|C|433
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
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