IL_4WSD_021
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GAAACCC*GGACUGAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_021 not in the Motif Atlas
- Homologous match to IL_6CZR_131
- Geometric discrepancy: 0.1988
- The information below is about IL_6CZR_131
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30149.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4WSD|1|13|G|450
4WSD|1|13|A|451
4WSD|1|13|A|452
4WSD|1|13|A|453
4WSD|1|13|C|454
4WSD|1|13|C|455
4WSD|1|13|C|456
*
4WSD|1|13|G|476
4WSD|1|13|G|477
4WSD|1|13|A|478
4WSD|1|13|C|479
4WSD|1|13|U|480
4WSD|1|13|G|481
4WSD|1|13|A|482
4WSD|1|13|C|483
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 7I
- 30S ribosomal protein S16
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