IL_4WSD_044

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAAC*GGUGCCCCGCGAGGGGAGCC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|13|G|1002
4WSD|1|13|G|1003
4WSD|1|13|A|1004
4WSD|1|13|A|1005
4WSD|1|13|C|1006
*
4WSD|1|13|G|1023
4WSD|1|13|G|1024
4WSD|1|13|U|1025
4WSD|1|13|G|1026
4WSD|1|13|C|1027
4WSD|1|13|C|1028
4WSD|1|13|C|1028|||A
4WSD|1|13|C|1028|||B
4WSD|1|13|G|1029
4WSD|1|13|C|1030
4WSD|1|13|G|1031
4WSD|1|13|A|1032
4WSD|1|13|G|1032|||A
4WSD|1|13|G|1032|||B
4WSD|1|13|G|1033
4WSD|1|13|G|1034
4WSD|1|13|A|1035
4WSD|1|13|G|1036
4WSD|1|13|C|1037
4WSD|1|13|C|1038

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2E

30S ribosomal protein S3