3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GG*UAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_075 not in the Motif Atlas
Homologous match to IL_7RQB_009
Geometric discrepancy: 0.1163
The information below is about IL_7RQB_009
Detailed Annotation
Major groove platform
Broad Annotation
Major groove platform
Motif group
IL_27635.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
38

Unit IDs

4WSD|1|14|G|273
4WSD|1|14|G|273|||A
*
4WSD|1|14|U|363|||E
4WSD|1|14|A|363|||F
4WSD|1|14|C|364

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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