IL_4WSD_079

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_079 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.0711

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4WSD|1|14|U|293
4WSD|1|14|A|294
4WSD|1|14|G|295
*
4WSD|1|14|C|343
4WSD|1|14|G|344
4WSD|1|14|A|345
4WSD|1|14|A|346
4WSD|1|14|A|347

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L24