IL_4WSD_081

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_081 not in the Motif Atlas

Homologous match to IL_7RQB_015

Geometric discrepancy: 0.0786

The information below is about IL_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4WSD|1|14|C|564
4WSD|1|14|C|565
4WSD|1|14|U|566
*
4WSD|1|14|A|575
4WSD|1|14|U|576
4WSD|1|14|G|577

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4

Chain 85

50S ribosomal protein L20

Chain 95

50S ribosomal protein L21