3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
4WSD|1|14|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_108 not in the Motif Atlas
Homologous match to IL_7RQB_045
Geometric discrepancy: 0.0691
The information below is about IL_7RQB_045
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

4WSD|1|14|C|1196
4WSD|1|14|G|1197
4WSD|1|14|U|1198
*
4WSD|1|14|A|1247
4WSD|1|14|G|1248
4WSD|1|14|U|1249
4WSD|1|14|G|1250

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 35
50S ribosomal protein L15
Chain 39
50S ribosomal protein L4
Chain 85
50S ribosomal protein L20

Coloring options:


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