IL_4WSD_128

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4WSD|1|14|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_128 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1094

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4WSD|1|14|C|1686
4WSD|1|14|G|1687
4WSD|1|14|U|1688
4WSD|1|14|A|1689
4WSD|1|14|A|1690
4WSD|1|14|C|1691
*
4WSD|1|14|G|1696
4WSD|1|14|G|1697
4WSD|1|14|A|1698
4WSD|1|14|G|1699
4WSD|1|14|A|1700
4WSD|1|14|A|1701
4WSD|1|14|G|1702

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA