3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UG*UGAA
Length
6 nucleotides
Bulged bases
4WSD|1|14|A|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_132 not in the Motif Atlas
Homologous match to IL_5J7L_315
Geometric discrepancy: 0.0557
The information below is about IL_5J7L_315
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.4
Basepair signature
cWW-cWW
Number of instances in this motif group
30

Unit IDs

4WSD|1|14|U|1841
4WSD|1|14|G|1842
*
4WSD|1|14|U|1898
4WSD|1|14|G|1899
4WSD|1|14|A|1900
4WSD|1|14|A|1901

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 1G
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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