IL_4WSD_139
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 4WSD|1|14|C|2055, 4WSD|1|14|C|2612, 4WSD|1|14|U|2613, 4WSD|1|14|A|2614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_139 not in the Motif Atlas
- Homologous match to IL_9DFE_079
- Geometric discrepancy: 0.0835
- The information below is about IL_9DFE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70335.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4WSD|1|14|A|2054
4WSD|1|14|C|2055
4WSD|1|14|G|2056
4WSD|1|14|A|2057
*
4WSD|1|14|U|2611
4WSD|1|14|C|2612
4WSD|1|14|U|2613
4WSD|1|14|A|2614
4WSD|1|14|U|2615
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L3
- Chain 39
- 50S ribosomal protein L4
- Chain A5
- 50S ribosomal protein L22
- Chain J5
- 50S ribosomal protein L32
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