IL_4WSD_146

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUGGGAG*CGCCGGUGAAAUACCAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|14|G|2121
4WSD|1|14|U|2122
4WSD|1|14|G|2123
4WSD|1|14|G|2124
4WSD|1|14|G|2125
4WSD|1|14|A|2126
4WSD|1|14|G|2127
*
4WSD|1|14|C|2161
4WSD|1|14|G|2162
4WSD|1|14|C|2163
4WSD|1|14|C|2164
4WSD|1|14|G|2165
4WSD|1|14|G|2166
4WSD|1|14|U|2167
4WSD|1|14|G|2168
4WSD|1|14|A|2169
4WSD|1|14|A|2170
4WSD|1|14|A|2171
4WSD|1|14|U|2172
4WSD|1|14|A|2173
4WSD|1|14|C|2174
4WSD|1|14|C|2175
4WSD|1|14|A|2176
4WSD|1|14|C|2177

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA