IL_4WSD_169

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCACGGCGUCAAGCCGGUAAG*CGAGG

Length

26 nucleotides

Bulged bases

4WSD|1|14|U|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|14|C|2788
4WSD|1|14|C|2789
4WSD|1|14|A|2790
4WSD|1|14|C|2791
4WSD|1|14|G|2792
4WSD|1|14|G|2793
4WSD|1|14|C|2794
4WSD|1|14|G|2795
4WSD|1|14|U|2797
4WSD|1|14|C|2798
4WSD|1|14|A|2799
4WSD|1|14|A|2801
4WSD|1|14|G|2802
4WSD|1|14|C|2803
4WSD|1|14|C|2804
4WSD|1|14|G|2805
4WSD|1|14|G|2807
4WSD|1|14|U|2808
4WSD|1|14|A|2809
4WSD|1|14|A|2810
4WSD|1|14|G|2811
*
4WSD|1|14|C|2889
4WSD|1|14|G|2891
4WSD|1|14|A|2892
4WSD|1|14|G|2893
4WSD|1|14|G|2894

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain A5

50S ribosomal protein L22