IL_4WSD_173
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GUG*UGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_173 not in the Motif Atlas
- Geometric match to IL_5MWI_006
- Geometric discrepancy: 0.1705
- The information below is about IL_5MWI_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
4WSD|1|16|G|7
4WSD|1|16|U|8
4WSD|1|16|G|9
*
4WSD|1|16|U|111
4WSD|1|16|G|112
4WSD|1|16|C|113
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain A8
- 50S ribosomal protein L18
- Chain I8
- 50S ribosomal protein L27
Coloring options: