3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GUG*UGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_173 not in the Motif Atlas
Geometric match to IL_5MWI_006
Geometric discrepancy: 0.1705
The information below is about IL_5MWI_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
259

Unit IDs

4WSD|1|16|G|7
4WSD|1|16|U|8
4WSD|1|16|G|9
*
4WSD|1|16|U|111
4WSD|1|16|G|112
4WSD|1|16|C|113

Current chains

Chain 16
5S ribosomal RNA

Nearby chains

Chain 1H
Large subunit ribosomal RNA; LSU rRNA
Chain A8
50S ribosomal protein L18
Chain I8
50S ribosomal protein L27

Coloring options:


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