3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CAU*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_244 not in the Motif Atlas
Homologous match to IL_5J7L_061
Geometric discrepancy: 0.1407
The information below is about IL_5J7L_061
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4WSD|1|1G|C|1412
4WSD|1|1G|A|1413
4WSD|1|1G|U|1414
*
4WSD|1|1G|G|1486
4WSD|1|1G|G|1487
4WSD|1|1G|G|1488

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 14
Large subunit ribosomal RNA; LSU rRNA
Chain 3A
30S ribosomal protein S12

Coloring options:


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