3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGAAG*CGAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_246 not in the Motif Atlas
Geometric match to IL_4LFB_062
Geometric discrepancy: 0.0755
The information below is about IL_4LFB_062
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_77691.5
Basepair signature
cWW-tSH-L-R-L-cWW
Number of instances in this motif group
7

Unit IDs

4WSD|1|1G|C|1431
4WSD|1|1G|G|1432
4WSD|1|1G|A|1433
4WSD|1|1G|A|1434
4WSD|1|1G|G|1435
*
4WSD|1|1G|C|1466
4WSD|1|1G|G|1467
4WSD|1|1G|A|1468
4WSD|1|1G|G|1469

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 14
Large subunit ribosomal RNA; LSU rRNA
Chain 75
50S ribosomal protein L19
Chain BA
30S ribosomal protein S20

Coloring options:


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