IL_4WSD_250

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_250 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0526

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WSD|1|1H|G|24
4WSD|1|1H|U|25
4WSD|1|1H|G|26
4WSD|1|1H|G|27
4WSD|1|1H|A|28
4WSD|1|1H|U|29
4WSD|1|1H|G|30
*
4WSD|1|1H|C|510
4WSD|1|1H|U|511
4WSD|1|1H|G|512
4WSD|1|1H|A|513
4WSD|1|1H|A|514
4WSD|1|1H|A|515
4WSD|1|1H|C|516

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32