IL_4WSD_256

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_256 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0544

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4WSD|1|1H|U|239
4WSD|1|1H|G|240
4WSD|1|1H|A|241
4WSD|1|1H|G|242
4WSD|1|1H|U|243
4WSD|1|1H|A|244
4WSD|1|1H|G|245
*
4WSD|1|1H|C|253
4WSD|1|1H|G|254
4WSD|1|1H|A|255
4WSD|1|1H|A|256
4WSD|1|1H|A|257
4WSD|1|1H|G|258

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35