IL_4WSD_287

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4WSD|1|1H|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_287 not in the Motif Atlas

Homologous match to IL_7RQB_038

Geometric discrepancy: 0.0837

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4WSD|1|1H|G|1011
4WSD|1|1H|U|1012
4WSD|1|1H|C|1013
*
4WSD|1|1H|G|1149
4WSD|1|1H|C|1150

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 58

50S ribosomal protein L13

Chain C8

50S ribosomal protein L20