3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
AUGAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_299 not in the Motif Atlas
Homologous match to IL_7RQB_049
Geometric discrepancy: 0.0476
The information below is about IL_7RQB_049
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4WSD|1|1H|A|1262
4WSD|1|1H|U|1263
4WSD|1|1H|G|1264
4WSD|1|1H|A|1265
4WSD|1|1H|G|1266
4WSD|1|1H|U|1267
4WSD|1|1H|A|1268
4WSD|1|1H|A|1269
*
4WSD|1|1H|U|2011
4WSD|1|1H|G|2012
4WSD|1|1H|A|2013
4WSD|1|1H|A|2014
4WSD|1|1H|A|2015
4WSD|1|1H|U|2016
4WSD|1|1H|U|2017

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 31
50S ribosomal protein L4
Chain 98
50S ribosomal protein L17
Chain E8
50S ribosomal protein L22
Chain N8
50S ribosomal protein L32

Coloring options:


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