IL_4WSD_310

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_310 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.085

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4WSD|1|1H|A|1469
4WSD|1|1H|G|1470
4WSD|1|1H|A|1471
4WSD|1|1H|A|1472
4WSD|1|1H|G|1473
*
4WSD|1|1H|U|1520
4WSD|1|1H|G|1521
4WSD|1|1H|G|1522
4WSD|1|1H|U|1523

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains