IL_4WSD_327
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4WSD|1|1H|A|1938, 4WSD|1|1H|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_327 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1577
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
4WSD|1|1H|C|1934
4WSD|1|1H|G|1935
4WSD|1|1H|A|1936
4WSD|1|1H|A|1937
4WSD|1|1H|A|1938
4WSD|1|1H|U|1939
4WSD|1|1H|U|1940
4WSD|1|1H|C|1941
4WSD|1|1H|C|1942
4WSD|1|1H|U|1943
4WSD|1|1H|U|1944
4WSD|1|1H|G|1945
*
4WSD|1|1H|C|1961
4WSD|1|1H|C|1962
4WSD|1|1H|U|1963
4WSD|1|1H|G|1964
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1K
- Transfer RNA; tRNA
Coloring options: