IL_4WSD_335

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4WSD|1|1H|C|2111, 4WSD|1|1H|G|2112, 4WSD|1|1H|U|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_335 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2437

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4WSD|1|1H|G|2110
4WSD|1|1H|C|2111
4WSD|1|1H|G|2112
4WSD|1|1H|U|2113
4WSD|1|1H|A|2114
4WSD|1|1H|G|2115
4WSD|1|1H|G|2116
4WSD|1|1H|A|2117
4WSD|1|1H|U|2118
4WSD|1|1H|A|2119
4WSD|1|1H|G|2120
*
4WSD|1|1H|C|2178
4WSD|1|1H|C|2179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA