3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
4WSD|1|1H|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_359 not in the Motif Atlas
Homologous match to IL_7RQB_107
Geometric discrepancy: 0.0694
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4WSD|1|1H|G|2737
4WSD|1|1H|A|2738
4WSD|1|1H|U|2739
4WSD|1|1H|A|2740
4WSD|1|1H|A|2741
4WSD|1|1H|C|2742
*
4WSD|1|1H|G|2762
4WSD|1|1H|G|2763
4WSD|1|1H|A|2764
4WSD|1|1H|A|2765
4WSD|1|1H|G|2766
4WSD|1|1H|C|2767

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 51
50S ribosomal protein L6
Chain 58
50S ribosomal protein L13

Coloring options:


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