IL_4WSD_366

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCC*GGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_366 not in the Motif Atlas

Homologous match to IL_4WF9_114

Geometric discrepancy: 0.244

The information below is about IL_4WF9_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10810.1

Basepair signature

cWW-L-cWS-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WSD|1|1J|C|30
4WSD|1|1J|C|31
4WSD|1|1J|C|32
*
4WSD|1|1J|G|50
4WSD|1|1J|G|51
4WSD|1|1J|A|52
4WSD|1|1J|A|53
4WSD|1|1J|G|54

Current chains

Chain 1J

5S ribosomal RNA

Nearby chains

Chain 49

50S ribosomal protein L5

Chain 65

50S ribosomal protein L18