IL_4WSD_375

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_375 not in the Motif Atlas

Homologous match to IL_3AMU_001

Geometric discrepancy: 0.3688

The information below is about IL_3AMU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|3L|C|49
4WSD|1|3L|U|50
4WSD|1|3L|U|51
4WSD|1|3L|G|52
*
4WSD|1|3L|C|62
4WSD|1|3L|G|63
4WSD|1|3L|A|64
4WSD|1|3L|G|65

Current chains

Chain 3L

tRNA-Phe

Nearby chains