IL_4WSD_379

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AGUUGCCAGC*GGGCACUCU

Length

19 nucleotides

Bulged bases

4WSD|1|13|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|13|A|1123
4WSD|1|13|G|1124
4WSD|1|13|U|1125
4WSD|1|13|U|1126
4WSD|1|13|G|1127
4WSD|1|13|C|1128
4WSD|1|13|C|1129
4WSD|1|13|A|1130
4WSD|1|13|G|1131
4WSD|1|13|C|1132
*
4WSD|1|13|G|1142
4WSD|1|13|G|1143
4WSD|1|13|G|1144
4WSD|1|13|C|1145
4WSD|1|13|A|1146
4WSD|1|13|C|1147
4WSD|1|13|U|1148
4WSD|1|13|C|1149
4WSD|1|13|U|1150

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1I

30S ribosomal protein S10

Chain 8E

30S ribosomal protein S9