IL_4WSD_385

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AGGAU*AUUUAAAGAGUGCGUAAUAGCUCACU

Length

31 nucleotides

Bulged bases

4WSD|1|14|A|1084, 4WSD|1|14|A|1085, 4WSD|1|14|A|1086, 4WSD|1|14|A|1088, 4WSD|1|14|G|1089, 4WSD|1|14|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|14|A|1054
4WSD|1|14|G|1055
4WSD|1|14|G|1056
4WSD|1|14|A|1057
4WSD|1|14|U|1058
*
4WSD|1|14|A|1080
4WSD|1|14|U|1081
4WSD|1|14|U|1082
4WSD|1|14|U|1083
4WSD|1|14|A|1084
4WSD|1|14|A|1085
4WSD|1|14|A|1086
4WSD|1|14|G|1087
4WSD|1|14|A|1088
4WSD|1|14|G|1089
4WSD|1|14|U|1090
4WSD|1|14|G|1091
4WSD|1|14|C|1092
4WSD|1|14|G|1093
4WSD|1|14|U|1094
4WSD|1|14|A|1095
4WSD|1|14|A|1096
4WSD|1|14|U|1097
4WSD|1|14|A|1098
4WSD|1|14|G|1099
4WSD|1|14|C|1100
4WSD|1|14|U|1101
4WSD|1|14|C|1102
4WSD|1|14|A|1103
4WSD|1|14|C|1104
4WSD|1|14|U|1105

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6