IL_4WSD_389

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_389 not in the Motif Atlas

Geometric match to IL_8VTW_350

Geometric discrepancy: 0.0596

The information below is about IL_8VTW_350

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.2

Basepair signature

cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L

Number of instances in this motif group

6

Unit IDs

4WSD|1|14|G|1666
4WSD|1|14|G|1667
4WSD|1|14|A|1668
4WSD|1|14|A|1669
4WSD|1|14|C|1670
4WSD|1|14|U|1671
4WSD|1|14|C|1672
4WSD|1|14|U|1673
4WSD|1|14|G|1674
*
4WSD|1|14|C|1990
4WSD|1|14|U|1991
4WSD|1|14|G|1992
4WSD|1|14|U|1993
4WSD|1|14|C|1994

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3