IL_4WSD_395

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4WSD|1|1G|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_395 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1971

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4WSD|1|1G|G|1048
4WSD|1|1G|U|1049
4WSD|1|1G|G|1050
*
4WSD|1|1G|C|1208
4WSD|1|1G|C|1209

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z