3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UGCAUG*CAUG
Length
10 nucleotides
Bulged bases
4WSD|1|1G|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_396 not in the Motif Atlas
Geometric match to IL_6CZR_365
Geometric discrepancy: 0.2282
The information below is about IL_6CZR_365
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_45699.1
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4WSD|1|1G|U|1052
4WSD|1|1G|G|1053
4WSD|1|1G|C|1054
4WSD|1|1G|A|1055
4WSD|1|1G|U|1056
4WSD|1|1G|G|1057
*
4WSD|1|1G|C|1203
4WSD|1|1G|A|1204
4WSD|1|1G|U|1205
4WSD|1|1G|G|1206

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 1L
Transfer RNA; tRNA
Chain 22
30S ribosomal protein S3
Chain 4L
mRNA
Chain 5A
30S ribosomal protein S14 type Z

Coloring options:


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