IL_4WSD_402

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCUAGGGGG*CCUACCAAAC

Length

19 nucleotides

Bulged bases

4WSD|1|1H|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|1H|G|875
4WSD|1|1H|C|876
4WSD|1|1H|U|877
4WSD|1|1H|A|878
4WSD|1|1H|G|879
4WSD|1|1H|G|880
4WSD|1|1H|G|881
4WSD|1|1H|G|882
4WSD|1|1H|G|883
*
4WSD|1|1H|C|893
4WSD|1|1H|C|894
4WSD|1|1H|U|895
4WSD|1|1H|A|896
4WSD|1|1H|C|897
4WSD|1|1H|C|898
4WSD|1|1H|A|899
4WSD|1|1H|A|900
4WSD|1|1H|A|901
4WSD|1|1H|C|902

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16

Chain H8

50S ribosomal protein L25