IL_4WSD_404

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUG*CUCAC

Length

42 nucleotides

Bulged bases

4WSD|1|1H|U|1061, 4WSD|1|1H|A|1070, 4WSD|1|1H|U|1082, 4WSD|1|1H|U|1083, 4WSD|1|1H|A|1084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|1H|G|1055
4WSD|1|1H|G|1056
4WSD|1|1H|A|1057
4WSD|1|1H|U|1058
4WSD|1|1H|G|1059
4WSD|1|1H|U|1060
4WSD|1|1H|U|1061
4WSD|1|1H|G|1062
4WSD|1|1H|G|1063
4WSD|1|1H|C|1064
4WSD|1|1H|U|1065
4WSD|1|1H|U|1066
4WSD|1|1H|A|1067
4WSD|1|1H|G|1068
4WSD|1|1H|A|1069
4WSD|1|1H|A|1070
4WSD|1|1H|G|1071
4WSD|1|1H|C|1072
4WSD|1|1H|A|1073
4WSD|1|1H|G|1074
4WSD|1|1H|C|1075
4WSD|1|1H|C|1076
4WSD|1|1H|A|1077
4WSD|1|1H|U|1078
4WSD|1|1H|C|1079
4WSD|1|1H|A|1080
4WSD|1|1H|U|1081
4WSD|1|1H|U|1082
4WSD|1|1H|U|1083
4WSD|1|1H|A|1084
4WSD|1|1H|A|1085
4WSD|1|1H|A|1086
4WSD|1|1H|G|1087
4WSD|1|1H|A|1088
4WSD|1|1H|G|1089
4WSD|1|1H|U|1090
4WSD|1|1H|G|1091
*
4WSD|1|1H|C|1100
4WSD|1|1H|U|1101
4WSD|1|1H|C|1102
4WSD|1|1H|A|1103
4WSD|1|1H|C|1104

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains