IL_4WSD_414

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCGCGAAGACAGC*GUCGAGUGG

Length

22 nucleotides

Bulged bases

4WSD|1|14|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|14|C|1040
4WSD|1|14|C|1041
4WSD|1|14|G|1042
4WSD|1|14|C|1043
4WSD|1|14|G|1044
4WSD|1|14|A|1045
4WSD|1|14|A|1046
4WSD|1|14|G|1047
4WSD|1|14|A|1048
4WSD|1|14|C|1049
4WSD|1|14|A|1050
4WSD|1|14|G|1051
4WSD|1|14|C|1052
*
4WSD|1|14|G|1107
4WSD|1|14|U|1108
4WSD|1|14|C|1109
4WSD|1|14|G|1110
4WSD|1|14|A|1111
4WSD|1|14|G|1112
4WSD|1|14|U|1113
4WSD|1|14|G|1114
4WSD|1|14|G|1115

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6

Chain D5

50S ribosomal protein L25