IL_4WSM_028

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_028 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.1511

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4WSM|1|13|G|597
4WSM|1|13|U|598
*
4WSM|1|13|A|640
4WSM|1|13|U|641
4WSM|1|13|A|642
4WSM|1|13|C|643

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7E

30S ribosomal protein S8

Chain 8I

30S ribosomal protein S17