3D structure

PDB id
4WSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GU*AUAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSM_028 not in the Motif Atlas
Homologous match to IL_4LFB_025
Geometric discrepancy: 0.1511
The information below is about IL_4LFB_025
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
18

Unit IDs

4WSM|1|13|G|597
4WSM|1|13|U|598
*
4WSM|1|13|A|640
4WSM|1|13|U|641
4WSM|1|13|A|642
4WSM|1|13|C|643

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 7E
30S ribosomal protein S8
Chain 8I
30S ribosomal protein S17

Coloring options:


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