IL_4WSM_053

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_053 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.4765

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4WSM|1|13|C|1128
4WSM|1|13|C|1129
4WSM|1|13|A|1130
4WSM|1|13|G|1131
4WSM|1|13|C|1132
*
4WSM|1|13|G|1142
4WSM|1|13|G|1143

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8E

30S ribosomal protein S9