IL_4WSM_074

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_074 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0582

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4WSM|1|14|U|239
4WSM|1|14|G|240
4WSM|1|14|A|241
4WSM|1|14|G|242
4WSM|1|14|U|243
4WSM|1|14|A|244
4WSM|1|14|G|245
*
4WSM|1|14|C|253
4WSM|1|14|G|254
4WSM|1|14|A|255
4WSM|1|14|A|256
4WSM|1|14|A|257
4WSM|1|14|G|258

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain M5

50S ribosomal protein L35