IL_4WSM_086

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WSM|1|14|G|801, 4WSM|1|14|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_086 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0973

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WSM|1|14|G|674
4WSM|1|14|A|675
4WSM|1|14|A|676
4WSM|1|14|A|677
4WSM|1|14|C|678
*
4WSM|1|14|G|799
4WSM|1|14|A|800
4WSM|1|14|G|801
4WSM|1|14|A|802
4WSM|1|14|U|803
4WSM|1|14|A|804
4WSM|1|14|G|805
4WSM|1|14|C|806

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4