IL_4WSM_137

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4WSM|1|14|G|1801, 4WSM|1|14|G|1816, 4WSM|1|14|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_137 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0491

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WSM|1|14|U|1798
4WSM|1|14|G|1799
4WSM|1|14|C|1800
4WSM|1|14|G|1801
4WSM|1|14|A|1802
4WSM|1|14|A|1803
4WSM|1|14|C|1804
*
4WSM|1|14|G|1813
4WSM|1|14|G|1814
4WSM|1|14|A|1815
4WSM|1|14|G|1816
4WSM|1|14|G|1817
4WSM|1|14|U|1818
4WSM|1|14|A|1819
4WSM|1|14|U|1820
4WSM|1|14|A|1821

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA